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Research Program

The development of high throughput technologies in genomics, transcriptomics, epigenetics, and proteomics in combination with advanced cell fate mapping techniques currently revolutionizes our understanding of the cellular composition of organs. Moreover, they provide novel insight into cellular and molecular plasticity down to the single cell level. Along with the achievements of modern omics technology, there is an extensive advancement in the generation of sophisticated bioinformatic tools indispensable for the analysis of large data sets. In combination, these developments enabled the discovery of phenotypic variants of canonical cell types based on their transcriptional profiles. Moreover, tools like trajectory inference and pseudotime analysis promote new models on cellular behavior in physiology and pathology. In that, unbiased omics approaches coupled with comprehensive bioinformatic analysis leads to new hypotheses on the dynamics of cellular alterations and their profound impact on organ function and dysfunction. 

The overarching hypothesis for all projects in IRTG3109 states that the plastic modulation of the molecular repertoire of cardiomyocytes, endothelial, smooth muscle, and immune cells as well as fibroblasts is associated with the acquisition of novel cellular phenotypes and is of critical importance for organ function and dysfunction. Therefore, to understand the cellular behavior researchers of IRTG3109 use a wide range of research tools ranging from in vivo and in vitro models of normal cardiovascular function and disease, including the functional analysis of heart, vessels and cellular subtypes, omics analysis, to, last but not least, a competent analysis of omics data by bioinformatics tools. 

Our research projects

Miriam Cortese-Krott and Brant E. Isakson

Role of microvascular endothelial cell heterogeneity and plasticity in adipose tissue homeostasis

This project investigates how microvascular endothelial cell (MVEC) heterogeneity and plasticity regulate adipose tissue homeostasis. Using single-cell omics in human and murine models, we explore how high-fat diets (HFD) alter endothelial identity and function. Our preliminary data highlight the role of caveolin-1 (Cav1) and endothelial nitric oxide synthase (eNOS) in lipid handling and CD36 nitrosation. We will dissect NO signaling in MVECs using EC-specific Cav1 and eNOS KO/KI mice. Spatial transcriptomics and metabolic profiling will reveal how dysfunctional eNOS/Cav1 signaling impacts fat accumulation and cardiovascular hemodynamics. In vitro co-culture and organoid models will assess how redox modifications of CD36 affect lipid uptake. Finally, CD36 knock-in mice will validate key pathways in vivo. This work may uncover novel endothelial targets for obesity-related disorders.

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Eckhard Lammert & Karen K. Hirschi

Investigation into adult human endothelial cell (EC) plasticity

Endothelial cells form the inner lining of all blood vessels in the human body. The endothelial cells of blood capillaries (the most abundant and smallest blood vessels of the body) face (i) the blood stream with their lumenal (or apical) cell surface and (ii) the cells of a given organ with their ablumenal (or basolateral) cell surface. They therefore form the cellular link between the blood and organ. Notably, endothelial cells can react to alterations in the blood by releasing multiple different angiocrine signals to the cells of a given organ. The alterations in the blood could be mechanical (due to changes in blood flow, blood pressure or blood viscosity) or chemical (due to alterations in nutrients, gases or hormones). Notably, an increased blood flow can result in mechanical stretching of endothelial cells, so that they secrete angiocrine signals to induce organ growth and regeneration. In a collaborative effort of the Hirschi and Lammert laboratories, the ability of capillary endothelial cells to release organ growth-promoting angiocrine signals will be investigated by using “omics” technology and bioinformatics. The identified angiocrine signals from the endothelial cells and corresponding receptors on cells of a given organ can be used to develop therapeutics to booster organ regeneration.    

 

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Johannes Stegbauer and Brant E. Isakson

Sodium Chloride as Promoter of Vascular Disease

Continuous changes in vascular structure and function play a key role in the vascular disease development. The transition from healthy to diseased vessels depends on exogenous and endogenous factors affecting the plasticity of endothelial cells (ECs) and vascular smooth muscle cells. This process is characterized by low-grade inflammation, reduced nitric oxide (NO) availability, mitochondrial dysfunction, and extracellular matrix remodeling. High sodium intake impairs vascular function and is linked to increased cardiovascular risk. Thus, high salt intake promotes a pro-inflammatory immune response, impairs mitochondrial function and NO availability. It also stiffens ECs and enhances myogenic tone in resistance arteries, suggesting a direct impact on EC phenotype and plasticity. Recently, we found evidence that high salt may also induce cellular “salt memory,” altering vascular plasticity and increasing susceptibility to vascular damage following a second hypertensive insult. The exact mechanisms underlying this effect remain unclear and will be explored through a multimodal approach using in vitro cell systems, ex vivo vascular function analyses, and in vivo animal models.

 

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Judith Haendeler and Swapnil Sonkusare

Endothelial and vascular smooth muscle cells heterogeneity in senescence and disease

Aging is an independent risk factor for cardiovascular diseases. Characteristics are increased oxidative stress and chronic inflammation leading to endothelial cell (EC) senescence and a phenotypic switch in vascular smooth muscle cells (SMC). Both phenomena, which affect only a fraction of cells, contribute to age-associated vascular dysfunction resulting in e.g. hypertension. However, the mechanisms underlying the induction of the different phenotypes are not known. Therefore, the aim of project 4 is to investigate whether endothelial cell senescence precedes the smooth muscle cell transitions in different vascular beds. To achieve this aim, single cell RNAseq of murine tissue sections as well as human EC and SMC will be performed followed by bioinformatic analyses. After identification of potential pleiotropic regulators, proof of causality will be performed by lentiviral overexpression or downregulation in cells.

 

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Tobias Marschall, Mete Civelek and Clint L. Miller

Identification of genetic regulatory transcriptional networks in smooth muscle cell plasticity

Joachim Altschmied and Norbert Leitinger

Myofibroblast differentiation – common and/or tissue-specific pathways?

After injury, resident fibroblasts differentiate into myofibroblasts in response to mechanical cues or cytokines like transforming growth factor β1 (TGF-β1), but also to certain lipids. This differentiation is required during the healing phase. However, persistent activation of this cell type leads to adverse remodeling and fibrosis. Tissue-resident fibroblasts are heterogeneous with organ-specific subtypes and a “core” subtype present in all tissues. However, it is not clear, which subtype goes through the differentiation process. Therefore, the aim of project 6 is to investigate whether myofibroblast differentiation follows organ-specific pathways that are modulated by extrinsic and intrinsic conditions. To achieve this aim, single cell RNAseq of fibroblasts from different organs differentiated ex vivo will be performed followed by bioinformatic analyses. For proof of causality identified regulators will be overexpressed or downregulated in fibroblasts for validation.

 

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Katharina Bottermann, Jens W. Fischer and Thurl E. Harris

Impact of lipolytic products on fibroblast phenotype after myocardial infarction

Myocardial infarction stimulates white adipose tissue lipolysis and activates cardiac myofibroblasts. In project 7 we will test the hypothesis that lipolytic products released from WAT during the remodeling process after myocardial infarction alter cardiac fibroblast plasticity and substrate metabolism. We demonstrated that cardiac ischemia/reperfusion (I/R) induces chronic lipolysis and expression of the main lipolytic enzyme adipose triglyceride lipase (ATGL). Adipocyte specific KO of ATGL impairs cardiac healing after I/R and increases ECM - remodeling. We will therefore investigate the fibrotic remodeling after I/R in ATGL-KO hearts and analyze the contributing signaling pathways in chronic lipolysis stimulation after I/R. 

 

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Martina Krüger and Steven Caliari

Substrate stiffness as a determinant of cardiomyocyte – fibroblast communication and adaptation to proinflammatory cytokines

This project investigates how the stiffness of the cardiac cellular substrate influences the interaction between cardiomyocytes (CMs) and fibroblasts (FBs), as well as the release of proinflammatory cytokines. The collaboration with UVA combines innovative biomaterials with biomechanical single-cell analyses. CMs dynamically adjust their passive stiffness after myocardial infarction, a process involving cytokines such as IL-6 and TGF-β. By culturing rat CMs and FBs on synthetic substrates with defined stiffness, the project aims to examine mechanosensitive signaling pathways and their effects on cell morphology, cytokine release, and CM function. In addition, substrate-dependent changes in DNA methylation will be assessed using Nanopore sequencing, and cell type-specific transcriptional changes will be analyzed through bulk RNA sequencing. The aim is to gain a better understanding of early mechanical and molecular remodeling processes in the non-ischemic myocardium.

 

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Axel Gödecke and Matthew Wolf

Modulation of cardiac repair after myocardial infarction by endogenous Igf1

The group of Gödecke showed that a short term Insulin-like growth factor I (Igf1) application after acute myocardial infarction (MI) reduces scar size, and improves angiogenesis and pump function by phenotypic modulation neutrophils and macrophages towards an attenuated pro-inflammatory phenotype in vivo. Single cell sequencing revealed an abundant endogenous expression of Igf1 in cardiac fibroblasts and pericardial WT1+ expressing mesenchymal cells. The group of Matthew Wolf, by using an advanced lineage tracing system revealed that cardiac myocytes (CM) can reenter the cell cycle post-MI and eventually can from new CM. RNA sequencing of cycling CM revealed a transcription signature similar to that of epicardial or pericardial WT1+ progenitor cells and a striking upregulation of Igf1 expression. In a collaborative project, both groups plan to assess the effect of endogenous Igf1 on the modulation of cardiac cellular phenotypes and functional adaptation post MI. To this end, functional analysis, cell-type specific knockout mice, lineage tracing, single-cell sequencing and bioinformatics will be employed.

 

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Maria Grandoch, Daniel Dörr, Kenneth Walsh, and Gary Owens

Changes in the bone marrow niche in chronic inflammatory disease: promotion of clonal hematopoiesis and atherosclerosis?

We investigate how chronic inflammation in inflammatory bowel disease (IBD) promotes clonal hematopoiesis of indeterminate potential (CHIP) and increases cardiovascular disease (CVD) risk. Using murine models of chronic colitis and atherosclerosis, we study how inflammatory changes in the bone marrow (BM) affect the hematopoietic niche. In three work packages we investigate (1) cellular and transcriptomic changes in the BM niche, (2) CHIP expansion in colitis, and (3) CHIP’s impact on aortic cell plasticity and atherosclerosis. Single-cell and long-read transcriptomics, spatial transcriptomics, and immunohistology are used to uncover disease mechanisms. Bioinformatics tools will integrate these datasets to analyze clonal dynamics and cell-cell interactions. The collaborative project spans four labs, combining expertise in inflammation, clonal hematopoiesis, vascular biology, and bioinformatics. It aims to uncover causative mechanisms linking IBD, CHIP, and CVD.

 

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